BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028F04SP1|AL428936
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1305 1110 0.0
>3x_Contig1305
Length = 9229
Score = 1110 bits (560), Expect = 0.0
Identities = 597/608 (98%), Gaps = 1/608 (0%)
Strand = Plus / Plus
Query: 276 ttaaataaatatcatgagatgagatgagctggatttgagacaattttattattcttcagt 335
|||||||||||| ||||||||||||||| ||||||||||| || ||||||||| || |||
Sbjct: 15 ttaaataaatataatgagatgagatgagatggatttgagaaaaatttattattattaagt 74
Query: 336 aaaaacaaagactctaaggttgcgggaagtttatgtatacatagtgctgccaacaaccag 395
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 aaaaaaaaagaatctaaggttgcgggaagtttatgtatacatagtgctgccaacaaccag 134
Query: 396 tgatatattaattgtgtgaagacaagtatgagtgctactacgactatcagacacaggaga 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgatatattaattgtgtgaagacaagtatgagtgctactacgactatcagacacaggaga 194
Query: 456 tctatttctgaaaaattagagcagttaactcctgttgcaatttcaagcacgataaaaagg 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctatttctgaaaaattagagcagttaactcctgttgcaatttcaagcacgataaaaagg 254
Query: 516 ttatacagatatagtgaacttcctgaatggcaacaagacaatgataagattattacaggg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttatacagatatagtgaacttcctgaatggcaacaagacaatgataagattattacaggg 314
Query: 576 tatatccgtgaaactaaaagtgtaaaggaatgtgtcaaatcgttatt-cttattccataa 634
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 315 tatatccgtgaaactaaaagtgtaaaggaatgtgtcaaatcgttattgcttattccataa 374
Query: 635 tgaatcgataaacatttactctcatttggtcccgactattacgtatttggtgctccttgt 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgaatcgataaacatttactctcatttggtcccgactattacgtatttggtgctccttgt 434
Query: 695 tggattagcagatatgtttctcgtccctcaatttccaaactctactatgatgcaaagtgt 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tggattagcagatatgtttctcgtccctcaatttccaaactctactatgatgcaaagtgt 494
Query: 755 tatgatccatttcttcctattgggttcggtgctgtgcttaggatgcagcagctttttcca 814
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 tatgatccatgtcttcctattgggtccggtgctgtgcttaggatgcagcagctttttcca 554
Query: 815 ttgcttaaagcagcactccgaatcgcattgtcatatctggtctaaagtggactacatggg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgcttaaagcagcactccgaatcgcattgtcatatctggtctaaagtggactacatggg 614
Query: 875 aatcatta 882
||||||||
Sbjct: 615 aatcatta 622
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,917
Number of Sequences: 1807
Number of extensions: 12917
Number of successful extensions: 275
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)